Basically when I call pypy3 -m pip install numpy --user
I get thrown this lovely mess:
Traceback (most recent call last):
File "/opt/pypy3/lib-python/3/runpy.py", line 193, in _run_module_as_main
"__main__", mod_spec)
File "/opt/pypy3/lib-python/3/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/home/r392781/.local/lib/python3.5/site-packages/pip/__main__.py", line 16, in <module>
from pip._internal import main as _main # noqa
File "/home/r392781/.local/lib/python3.5/site-packages/pip/_internal/__init__.py", line 42, in <module>
from pip._internal import cmdoptions
File "/home/r392781/.local/lib/python3.5/site-packages/pip/_internal/cmdoptions.py", line 16, in <module>
from pip._internal.index import (
File "/home/r392781/.local/lib/python3.5/site-packages/pip/_internal/index.py", line 25, in <module>
from pip._internal.download import HAS_TLS, is_url, path_to_url, url_to_path
File "/home/r392781/.local/lib/python3.5/site-packages/pip/_internal/download.py", line 40, in <module>
from pip._internal.utils.logging import indent_log
File "/home/r392781/.local/lib/python3.5/site-packages/pip/_internal/utils/logging.py", line 9, in <module>
from pip._internal.utils.misc import ensure_dir
File "/home/r392781/.local/lib/python3.5/site-packages/pip/_internal/utils/misc.py", line 21, in <module>
from pip._vendor import pkg_resources
File "/home/r392781/.local/lib/python3.5/site-packages/pip/_vendor/pkg_resources/__init__.py", line 35, in <module>
import plistlib
File "/opt/pypy3/lib-python/3/plistlib.py", line 279, in <module>
_dateParser = re.compile(r"(?P<year>\d\d\d\d)(?:-(?P<month>\d\d)(?:-(?P<day>\d\d)(?:T(?P<hour>\d\d)(?::(?P<minute>\d\d)(?::(?P<second>\d\d))?)?)?)?)?Z", re.ASCII)
File "/opt/pypy3/lib-python/3/re.py", line 224, in compile
return _compile(pattern, flags)
File "/opt/pypy3/lib-python/3/re.py", line 293, in _compile
p = sre_compile.compile(pattern, flags)
File "/opt/pypy3/lib-python/3/sre_compile.py", line 540, in compile
p = sre_parse.parse(p, flags)
File "/opt/pypy3/lib-python/3/sre_parse.py", line 829, in parse
p = _parse_sub(source, pattern, 0)
File "/opt/pypy3/lib-python/3/sre_parse.py", line 437, in _parse_sub
itemsappend(_parse(source, state))
File "/opt/pypy3/lib-python/3/sre_parse.py", line 778, in _parse
p = _parse_sub(source, state)
File "/opt/pypy3/lib-python/3/sre_parse.py", line 437, in _parse_sub
itemsappend(_parse(source, state))
File "/opt/pypy3/lib-python/3/sre_parse.py", line 778, in _parse
p = _parse_sub(source, state)
File "/opt/pypy3/lib-python/3/sre_parse.py", line 437, in _parse_sub
itemsappend(_parse(source, state))
File "/opt/pypy3/lib-python/3/sre_parse.py", line 778, in _parse
p = _parse_sub(source, state)
File "/opt/pypy3/lib-python/3/sre_parse.py", line 437, in _parse_sub
itemsappend(_parse(source, state))
File "/opt/pypy3/lib-python/3/sre_parse.py", line 493, in _parse
subpattern = SubPattern(state)
File "/opt/pypy3/lib-python/3/sre_parse.py", line 107, in __init__
if data is None:
KeyboardInterrupt
r392781@MR-THINKPAD:~$ pypy3 -m pip install numpy --user
Collecting numpy
Downloading https://files.pythonhosted.org/packages/d5/6e/f00492653d0fdf6497a181a1c1d46bbea5a2383e7faf4c8ca6d6f3d2581d/numpy-1.14.5.zip (4.9MB)
100% |████████████████████████████████| 4.9MB 759kB/s
Building wheels for collected packages: numpy
Running setup.py bdist_wheel for numpy ... error
Complete output from command /usr/local/bin/pypy3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-8pnw1818/numpy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-rtmpcqec --python-tag pp360:
Running from numpy source directory.
blas_opt_info:
blas_mkl_info:
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmp0gbyfpzs/tmp
creating /tmp/tmp0gbyfpzs/tmp/tmp0gbyfpzs
compile options: '-MMD -MF /tmp/tmp0gbyfpzs/file.c.d -c'
cc: /tmp/tmp0gbyfpzs/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib']
NOT AVAILABLE
blis_info:
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpm97xxqid/tmp
creating /tmp/tmpm97xxqid/tmp/tmpm97xxqid
compile options: '-MMD -MF /tmp/tmpm97xxqid/file.c.d -c'
cc: /tmp/tmpm97xxqid/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries blis not found in ['/usr/local/lib', '/usr/lib']
NOT AVAILABLE
openblas_info:
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpiygihrzk/tmp
creating /tmp/tmpiygihrzk/tmp/tmpiygihrzk
compile options: '-MMD -MF /tmp/tmpiygihrzk/file.c.d -c'
cc: /tmp/tmpiygihrzk/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmp2g2vb_08/tmp
creating /tmp/tmp2g2vb_08/tmp/tmp2g2vb_08
compile options: '-MMD -MF /tmp/tmp2g2vb_08/file.c.d -c'
cc: /tmp/tmp2g2vb_08/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries openblas not found in ['/usr/local/lib', '/usr/lib']
NOT AVAILABLE
atlas_3_10_blas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpc5m71stl/tmp
creating /tmp/tmpc5m71stl/tmp/tmpc5m71stl
compile options: '-MMD -MF /tmp/tmpc5m71stl/file.c.d -c'
cc: /tmp/tmpc5m71stl/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries tatlas not found in ['/usr/local/lib', '/usr/lib']
NOT AVAILABLE
atlas_3_10_blas_info:
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpr8whjs6j/tmp
creating /tmp/tmpr8whjs6j/tmp/tmpr8whjs6j
compile options: '-MMD -MF /tmp/tmpr8whjs6j/file.c.d -c'
cc: /tmp/tmpr8whjs6j/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries satlas not found in ['/usr/local/lib', '/usr/lib']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpsew73n13/tmp
creating /tmp/tmpsew73n13/tmp/tmpsew73n13
compile options: '-MMD -MF /tmp/tmpsew73n13/file.c.d -c'
cc: /tmp/tmpsew73n13/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/lib', '/usr/lib']
NOT AVAILABLE
atlas_blas_info:
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmponl3vq9x/tmp
creating /tmp/tmponl3vq9x/tmp/tmponl3vq9x
compile options: '-MMD -MF /tmp/tmponl3vq9x/file.c.d -c'
cc: /tmp/tmponl3vq9x/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries f77blas,cblas,atlas not found in ['/usr/local/lib', '/usr/lib']
NOT AVAILABLE
/tmp/pip-install-8pnw1818/numpy/numpy/distutils/system_info.py:624: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
blas_info:
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpqq8njrpu/tmp
creating /tmp/tmpqq8njrpu/tmp/tmpqq8njrpu
compile options: '-MMD -MF /tmp/tmpqq8njrpu/file.c.d -c'
cc: /tmp/tmpqq8njrpu/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries blas not found in ['/usr/local/lib', '/usr/lib']
NOT AVAILABLE
/tmp/pip-install-8pnw1818/numpy/numpy/distutils/system_info.py:624: UserWarning:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
self.calc_info()
blas_src_info:
NOT AVAILABLE
/tmp/pip-install-8pnw1818/numpy/numpy/distutils/system_info.py:624: UserWarning:
Blas (http://www.netlib.org/blas/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [blas_src]) or by setting
the BLAS_SRC environment variable.
self.calc_info()
NOT AVAILABLE
/bin/sh: 1: svnversion: not found
non-existing path in 'numpy/distutils': 'site.cfg'
/bin/sh: 1: svnversion: not found
F2PY Version 2
lapack_opt_info:
lapack_mkl_info:
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpao6u0_98/tmp
creating /tmp/tmpao6u0_98/tmp/tmpao6u0_98
compile options: '-MMD -MF /tmp/tmpao6u0_98/file.c.d -c'
cc: /tmp/tmpao6u0_98/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib']
NOT AVAILABLE
openblas_lapack_info:
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpllk7ue4z/tmp
creating /tmp/tmpllk7ue4z/tmp/tmpllk7ue4z
compile options: '-MMD -MF /tmp/tmpllk7ue4z/file.c.d -c'
cc: /tmp/tmpllk7ue4z/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmps_1ll0gt/tmp
creating /tmp/tmps_1ll0gt/tmp/tmps_1ll0gt
compile options: '-MMD -MF /tmp/tmps_1ll0gt/file.c.d -c'
cc: /tmp/tmps_1ll0gt/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries openblas not found in ['/usr/local/lib', '/usr/lib']
NOT AVAILABLE
openblas_clapack_info:
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpnnkq0tlb/tmp
creating /tmp/tmpnnkq0tlb/tmp/tmpnnkq0tlb
compile options: '-MMD -MF /tmp/tmpnnkq0tlb/file.c.d -c'
cc: /tmp/tmpnnkq0tlb/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpugdovrgj/tmp
creating /tmp/tmpugdovrgj/tmp/tmpugdovrgj
compile options: '-MMD -MF /tmp/tmpugdovrgj/file.c.d -c'
cc: /tmp/tmpugdovrgj/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries openblas,lapack not found in ['/usr/local/lib', '/usr/lib']
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpvl4m18ve/tmp
creating /tmp/tmpvl4m18ve/tmp/tmpvl4m18ve
compile options: '-MMD -MF /tmp/tmpvl4m18ve/file.c.d -c'
cc: /tmp/tmpvl4m18ve/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries tatlas,tatlas not found in /usr/local/lib
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpifoz6px6/tmp
creating /tmp/tmpifoz6px6/tmp/tmpifoz6px6
compile options: '-MMD -MF /tmp/tmpifoz6px6/file.c.d -c'
cc: /tmp/tmpifoz6px6/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpt29izu7f/tmp
creating /tmp/tmpt29izu7f/tmp/tmpt29izu7f
compile options: '-MMD -MF /tmp/tmpt29izu7f/file.c.d -c'
cc: /tmp/tmpt29izu7f/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries tatlas,tatlas not found in /usr/lib
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmptui2ez7i/tmp
creating /tmp/tmptui2ez7i/tmp/tmptui2ez7i
compile options: '-MMD -MF /tmp/tmptui2ez7i/file.c.d -c'
cc: /tmp/tmptui2ez7i/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries lapack_atlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
NOT AVAILABLE
atlas_3_10_info:
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmprbn706th/tmp
creating /tmp/tmprbn706th/tmp/tmprbn706th
compile options: '-MMD -MF /tmp/tmprbn706th/file.c.d -c'
cc: /tmp/tmprbn706th/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries satlas,satlas not found in /usr/local/lib
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpf6r0h1jq/tmp
creating /tmp/tmpf6r0h1jq/tmp/tmpf6r0h1jq
compile options: '-MMD -MF /tmp/tmpf6r0h1jq/file.c.d -c'
cc: /tmp/tmpf6r0h1jq/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmp0tlhim9z/tmp
creating /tmp/tmp0tlhim9z/tmp/tmp0tlhim9z
compile options: '-MMD -MF /tmp/tmp0tlhim9z/file.c.d -c'
cc: /tmp/tmp0tlhim9z/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries satlas,satlas not found in /usr/lib
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpntp75rgc/tmp
creating /tmp/tmpntp75rgc/tmp/tmpntp75rgc
compile options: '-MMD -MF /tmp/tmpntp75rgc/file.c.d -c'
cc: /tmp/tmpntp75rgc/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries lapack_atlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_3_10_info'>
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmphc0j0o1q/tmp
creating /tmp/tmphc0j0o1q/tmp/tmphc0j0o1q
compile options: '-MMD -MF /tmp/tmphc0j0o1q/file.c.d -c'
cc: /tmp/tmphc0j0o1q/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmp120uasnp/tmp
creating /tmp/tmp120uasnp/tmp/tmp120uasnp
compile options: '-MMD -MF /tmp/tmp120uasnp/file.c.d -c'
cc: /tmp/tmp120uasnp/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmp7b07czgg/tmp
creating /tmp/tmp7b07czgg/tmp/tmp7b07czgg
compile options: '-MMD -MF /tmp/tmp7b07czgg/file.c.d -c'
cc: /tmp/tmp7b07czgg/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpjzsp10js/tmp
creating /tmp/tmpjzsp10js/tmp/tmpjzsp10js
compile options: '-MMD -MF /tmp/tmpjzsp10js/file.c.d -c'
cc: /tmp/tmpjzsp10js/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries lapack_atlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_threads_info'>
NOT AVAILABLE
atlas_info:
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpny_lxu2u/tmp
creating /tmp/tmpny_lxu2u/tmp/tmpny_lxu2u
compile options: '-MMD -MF /tmp/tmpny_lxu2u/file.c.d -c'
cc: /tmp/tmpny_lxu2u/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries f77blas,cblas,atlas not found in /usr/local/lib
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpatv6_y4u/tmp
creating /tmp/tmpatv6_y4u/tmp/tmpatv6_y4u
compile options: '-MMD -MF /tmp/tmpatv6_y4u/file.c.d -c'
cc: /tmp/tmpatv6_y4u/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries lapack_atlas not found in /usr/local/lib
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmprargolyu/tmp
creating /tmp/tmprargolyu/tmp/tmprargolyu
compile options: '-MMD -MF /tmp/tmprargolyu/file.c.d -c'
cc: /tmp/tmprargolyu/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries f77blas,cblas,atlas not found in /usr/lib
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmpcdlgt0ti/tmp
creating /tmp/tmpcdlgt0ti/tmp/tmpcdlgt0ti
compile options: '-MMD -MF /tmp/tmpcdlgt0ti/file.c.d -c'
cc: /tmp/tmpcdlgt0ti/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries lapack_atlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_info'>
NOT AVAILABLE
lapack_info:
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmphytscc3u/tmp
creating /tmp/tmphytscc3u/tmp/tmphytscc3u
compile options: '-MMD -MF /tmp/tmphytscc3u/file.c.d -c'
cc: /tmp/tmphytscc3u/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries lapack not found in ['/usr/local/lib', '/usr/lib']
NOT AVAILABLE
/tmp/pip-install-8pnw1818/numpy/numpy/distutils/system_info.py:624: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
self.calc_info()
lapack_src_info:
NOT AVAILABLE
/tmp/pip-install-8pnw1818/numpy/numpy/distutils/system_info.py:624: UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
self.calc_info()
NOT AVAILABLE
/opt/pypy3/lib-python/3/distutils/dist.py:261: UserWarning: Unknown distribution option: 'define_macros'
warnings.warn(msg)
running bdist_wheel
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
creating build
creating build/src.linux-x86_64-3.5
creating build/src.linux-x86_64-3.5/numpy
creating build/src.linux-x86_64-3.5/numpy/distutils
building library "npymath" sources
get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
customize Gnu95FCompiler
Could not locate executable gfortran
Could not locate executable f95
customize IntelFCompiler
Could not locate executable ifort
Could not locate executable ifc
customize LaheyFCompiler
Could not locate executable lf95
customize PGroupFCompiler
Could not locate executable pgfortran
customize AbsoftFCompiler
Could not locate executable f90
Could not locate executable f77
customize NAGFCompiler
customize VastFCompiler
customize CompaqFCompiler
Could not locate executable fort
customize IntelItaniumFCompiler
Could not locate executable efort
Could not locate executable efc
customize IntelEM64TFCompiler
customize GnuFCompiler
Could not locate executable g77
customize G95FCompiler
Could not locate executable g95
customize PathScaleFCompiler
Could not locate executable pathf95
customize NAGFORCompiler
Could not locate executable nagfor
don't know how to compile Fortran code on platform 'posix'
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/opt/pypy3/include -c'
cc: _configtest.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
failure.
removing: _configtest.c _configtest.o
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-8pnw1818/numpy/setup.py", line 394, in <module>
setup_package()
File "/tmp/pip-install-8pnw1818/numpy/setup.py", line 386, in setup_package
setup(**metadata)
File "/tmp/pip-install-8pnw1818/numpy/numpy/distutils/core.py", line 169, in setup
return old_setup(**new_attr)
File "/home/r392781/.local/lib/python3.5/site-packages/setuptools/__init__.py", line 131, in setup
return distutils.core.setup(**attrs)
File "/opt/pypy3/lib-python/3/distutils/core.py", line 148, in setup
dist.run_commands()
File "/opt/pypy3/lib-python/3/distutils/dist.py", line 955, in run_commands
self.run_command(cmd)
File "/opt/pypy3/lib-python/3/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/home/r392781/.local/lib/python3.5/site-packages/wheel/bdist_wheel.py", line 202, in run
self.run_command('build')
File "/opt/pypy3/lib-python/3/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/opt/pypy3/lib-python/3/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-8pnw1818/numpy/numpy/distutils/command/build.py", line 47, in run
old_build.run(self)
File "/opt/pypy3/lib-python/3/distutils/command/build.py", line 135, in run
self.run_command(cmd_name)
File "/opt/pypy3/lib-python/3/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/opt/pypy3/lib-python/3/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-8pnw1818/numpy/numpy/distutils/command/build_src.py", line 148, in run
self.build_sources()
File "/tmp/pip-install-8pnw1818/numpy/numpy/distutils/command/build_src.py", line 159, in build_sources
self.build_library_sources(*libname_info)
File "/tmp/pip-install-8pnw1818/numpy/numpy/distutils/command/build_src.py", line 294, in build_library_sources
sources = self.generate_sources(sources, (lib_name, build_info))
File "/tmp/pip-install-8pnw1818/numpy/numpy/distutils/command/build_src.py", line 377, in generate_sources
source = func(extension, build_dir)
File "numpy/core/setup.py", line 675, in get_mathlib_info
raise RuntimeError("Broken toolchain: cannot link a simple C program")
RuntimeError: Broken toolchain: cannot link a simple C program
----------------------------------------
Failed building wheel for numpy
Running setup.py clean for numpy
Complete output from command /usr/local/bin/pypy3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-8pnw1818/numpy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" clean --all:
Running from numpy source directory.
`setup.py clean` is not supported, use one of the following instead:
- `git clean -xdf` (cleans all files)
- `git clean -Xdf` (cleans all versioned files, doesn't touch
files that aren't checked into the git repo)
Add `--force` to your command to use it anyway if you must (unsupported).
----------------------------------------
Failed cleaning build dir for numpy
Failed to build numpy
Installing collected packages: numpy
Running setup.py install for numpy ... error
Complete output from command /usr/local/bin/pypy3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-8pnw1818/numpy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-imqs6g4k/install-record.txt --single-version-externally-managed --compile --user --prefix=:
Running from numpy source directory.
Note: if you need reliable uninstall behavior, then install
with pip instead of using `setup.py install`:
- `pip install .` (from a git repo or downloaded source
release)
- `pip install numpy` (last NumPy release on PyPi)
blas_opt_info:
blas_mkl_info:
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmppm47lllt/tmp
creating /tmp/tmppm47lllt/tmp/tmppm47lllt
compile options: '-MMD -MF /tmp/tmppm47lllt/file.c.d -c'
cc: /tmp/tmppm47lllt/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib']
NOT AVAILABLE
blis_info:
customize UnixCCompiler
C compiler: cc -pthread -DNDEBUG -O2 -fPIC
creating /tmp/tmp585jjn9u/tmp
creating /tmp/tmp585jjn9u/tmp/tmp585jjn9u
compile options: '-MMD -MF /tmp/tmp585jjn9u/file.c.d -c'
cc: /tmp/tmp585jjn9u/file.c
/bin/bash: cc: command not found
/bin/bash: cc: command not found
libraries blis not found in ['/usr/local/lib', '/usr/lib']
NOT AVAILABLE
...
...
I wasn't able to paste everything because it's so goddamn long
Anyway, I have the latest version of PyPy 6.0.0 and the latest version of pip 10.0.1. I'm running Ubuntu 16.04 as Windows Subsystem for Linux.
One thing I noticed is that the pip I run is actually located within python3.5. The thing is, I used the get-pip.py
file straight from PyPy's website to install pip for PyPy.
Here's the version info:
pypy3 -m pip -V
pip 10.0.1 from /home/r392781/.local/lib/python3.5/site-packages/pip (python 3.5)
I think I've tried everything from a bunch of different sites, but still nothing. Kind of at my wits end here.
One last thing, numpy installs just fine when using python3
instead of pypy3
.
I'm not sure if this is relevant since this is Ubuntu exchange, but I have PyPy3 and pip installed on windows. In this case, pip IS installed separately in a pypy3 directory BUT when I try to install numpy, I get thrown the same massive errors.
Since your issue seems to be from compiling from source, the same error probably would not occur if you installed a binary wheel of numpy to PyPy3
To do this, run the following command
pypy3 -m pip install --extra-index https://antocuni.github.io/pypy-wheels/ubuntu cpython numpy
pypy-wheels is a repository of precompiled wheels of some packages such as
numpy
Sidenote:
PyPy has it's own fork of NumPy called NumPyPy and is unsupported on PyPy3 at the moment. Taking an excerpt from the repo:
Therefore it's recommended that you install PyPy2.7 for the moment as it has support for NumPyPy
From http://doc.pypy.org/en/latest/release-pypy3-2.4.0.html it says
So you may try