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Sauko
Asked: 2020-11-13 05:19:11 +0800 CST

How can i solve this error? I am installing thirdorder using ././compile.sh command

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syl2@syl2-HP-EliteBook-840-G2:~/Applications/thirdorder$ ./compile.sh
running build
running build_ext
building 'thirdorder_core' extension
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/syl2/.local/lib/python3.8/site-packages/numpy/core/include -I/home/sy1/Applications/almabte-v1.3.2/build/external/spglib/src/spglib/python/ -I/usr/include/python3.8 -c thirdorder_core.c -o build/temp.linux-x86_64-3.8/thirdorder_core.o
In file included from /home/syl2/.local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
                 from /home/syl2/.local/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /home/syl2/.local/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from thirdorder_core.c:557:
/home/syl2/.local/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
thirdorder_core.c:559:10: fatal error: spglib/spglib.h: No such file or directory
  559 | #include "spglib/spglib.h"
      |          ^~~~~~~~~~~~~~~~~
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1

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I find spglib.h in the following directories but don't understand why its not accessible.

syl2@itel1530:~/Applications/thirdorder$ locate spglib.h

/home/syl2/.local/share/Trash/files/spglib.h /home/syl2/.local/share/Trash/info/spglib.h.trashinfo /home/syl2/Applications/almabte-v1.3.2/build/external/spglib/include/spglib/spglib.h /home/syl2/Applications/almabte-v1.3.2/build/external/spglib/src/spglib/src/spglib.h /home/syl2/Applications/spglib/src/spglib.h /home/syl2/Applications/thirdorder/spglib.h /snap/thirdorder/7/usr/local/include/spglib/spglib.h

software-installation

1 Answers

  1. Thank you for your responses. I solved this error by inserting the spglib directory in the setup.py file.

    ================================================

    Add the location of the "spglib/spglib.h" to this list if necessary.

    Example: INCLUDE_DIRS=["/home/user/local/include"]

    INCLUDE_DIRS = ["/snap/thirdorder/7/usr/local/include"] . . .

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