I recently backed up the home partition of my hard drive, using an Ubuntu LiveCD and GParted.
Now every time I navigate to the partition a little padlock icon appears in the corner of the file/folder, and the only way to access the file is to use Nautilus as the superuser.
Note: It also doesn't hurt to set the right Group here. You can do the same in the shell by typing:
Access home folder as superuser via terminal and then change owner with
chown