I'm running a bash script with php which will in turn run a python script but I get so many errors because it seems like www-data can't use the python packages I have installed for my own user. So how can I make a specific package available for www-data is it safe to do that? also is it safe to set www-data as the owner of a specific subtree of /var/www/html?

Here is the error I get when I run the following command:

sudo -u www-data ./bash_script_that_calls_runs_the_pythonscript.sh

Traceback (most recent call last):
  File "./file.py", line 5, in <module>
    from bs4 import BeautifulSoup
ImportError: No module named 'bs4'

But if I run:

./bash_script_that_calls_runs_the_pythonscript.sh

Everything will go fine.

And also:

~/.local/lib/python3.5/site-packages$ ll | grep bs4
drwxrwxr-x  5 me www-data  4096 Dec  2 15:37 bs4/
drwxrwxr-x  2 me www-data  4096 Dec  2 15:38 bs4-0.0.1.dist-info/

Please note that I've set the group recursively:

$ ll /home/me/.local/lib/python3.5/site-packages/bs4/
total 180
drwxrwxr-x  5 me www-data  4096 Dec  2 15:37 ./
drwx------ 51 me me        4096 Jan 16 04:33 ../
drwxrwxr-x  3 me www-data  4096 Dec  2 15:37 builder/
-rw-rw-r--  1 me www-data 29910 Dec  2 15:38 dammit.py
-rw-rw-r--  1 me www-data  6773 Dec  2 15:38 diagnose.py
-rw-rw-r--  1 me www-data 68798 Dec  2 15:38 element.py
-rw-rw-r--  1 me www-data 20394 Dec  2 15:38 __init__.py
drwxrwxr-x  2 me www-data  4096 Dec  2 15:37 __pycache__/
-rw-rw-r--  1 me www-data 30800 Dec  2 15:38 testing.py
drwxrwxr-x  3 me www-data  4096 Dec  2 15:37 tests/

The same goes for bs4-0.0.1.dist-info/

I was mirroring a website with the following command:

wget -m -nc -p -E -k -np -e robots=off https://www.somesite.com/ & disown

And everything was going on alright until I saw that it was stuck in

Reusing existing connection to www.somesite.com:443.

and I closed that tty.

What should I do to make it continue?

Here is a part of wget output:

www.somesite.com/.../sport.html       [   <=>                                           ] 833.32K  1.53MB/s    in 0.5s    
Last-modified header missing -- time-stamps turned off.
2018-02-10 16:34:23 (1.53 MB/s) - ‘www.somesite.com/.../sport.html’ saved [853319]

--2018-02-10 16:34:23--  http://www.somesite.com/.../social
Reusing existing connection to www.somesite.com:80.
HTTP request sent, awaiting response... 200 OK
Length: unspecified [text/html]
Saving to: ‘www.somesite.com/.../social.html’

www.somesite.com/.../social.html      [ <=>                                             ] 141.35K   816KB/s    in 0.2s    

Last-modified header missing -- time-stamps turned off.
2018-02-10 16:34:24 (816 KB/s) - ‘www.somesite.com/.../social.html’ saved [144747]

--2018-02-10 16:34:24--  http://www.somesite.com/.../parliament
Reusing existing connection to www.somesite.com:80.
HTTP request sent, awaiting response... 200 OK
Length: unspecified [text/html]
Saving to: ‘www.somesite.com/.../parliament.html’

The command I used is:

wget -m -c -p -E -k -np -e robots=off https://www.somesite.com

Is there no way to instruct wget to not download the same url that it had already downloaded before?

I have so many different images in a directory with sequential names 1 2 3 4 ... I was wondering if it was possible to convert all of them to jpg and resize them all to 900x900 without preserving aspect ratio.

What I tried for the first part is:

$ mogrify -format jpg -- *

But when I do this memory usage increases so quickly and then the process in killed. What I tried for resizing is:

$ mogrify -resize 900x900 -- *
mogrify: insufficient image data in file `109.jpg' @ error/jpeg.c/ReadJPEGImage/1039.
mogrify: no decode delegate for this image format `' @ error/constitute.c/ReadImage/501.
mogrify: no decode delegate for this image format `' @ error/constitute.c/ReadImage/501.
mogrify: no decode delegate for this image format `' @ error/constitute.c/ReadImage/501.
mogrify: no decode delegate for this image format `' @ error/constitute.c/ReadImage/501.

As I've said the names of the files are sequential numbers. I also have the following:

$ file * | grep -Po "^\d*: *\K[^:,]*(?=,)" | sort | uniq
ASCII text
GIF image data
JPEG image data
PNG image data

So What is the problem? How can I fix it?

I tried this but it didn't work. I changed the file in: /usr/share/themes/Ambiance/metacity-1/metacity-theme-1.xml and In my appearance gui window it says that I'm using Ambiance theme. How can I get rid of this useless title bar with the three buttons on it on all the windows so that for example my gnome-terminal window will look like a simple black box with an orange scroll-bar on the right side? I have never used this bar and it's just occupying my space:D! I hate it! I just don't want to see it anymore! Can anyone please help me get rid of it?

I want to make a bash function that would behave just like how wc -l behaves on multiple files to count their number of lines in counting the number of files in a set of directories. How wc -l works:

wc -l test.zip  tt.zip zzz.zip | sort
     17 tt.zip
   2015 test.zip
   6567 zzz.zip
   8599 total

How I want my function to work on files:

count dir1 dir2 dir3 | sort:
      1 dir1
    144 dir2
   1000 dir3
   1145 total

Where dir{1..3} are 3 directories and the number of files shown includes the hidden files.

What I've already done:

#/bin/bash
count() {
    if [ "`file -b $1`" == 'directory' ] ; then    
        echo `la "$1" | wc -l`
    else
        wc -l "$@" | sort
    fi
}

I can implement it with a for loop on $@ but I'd rather find an easier solution. If you can also help me include the size of each directory. You would make me really happy!

I need to run a command from python so I'm doing:

os.system('IFS=".";for f in data/* ; do read -ra ADDR <<< "$f";     mv "$f" "data/${ADDR[-1]}"; done;')

but it says :

sh: 1: Syntax error: redirection unexpected

But if I run this in bash it works fine:

IFS="."
for f in data/* 
do 
    read -ra ADDR <<< "$f"
    mv "$f" "data/${ADDR[-1]}"
done;

It works just fine. How can I fix it to work in one line?

I have a zipped text file a.zip I want to read the first 10 lines of it. Is it possible to do that without unzipping the whole file?

I've written a script that uses ps -G <groupid> -o uid,cmd to log the commands that a certain group of the users of a system run in time.

What I want to know is whether it's possible for the users to hide what they are doing from my script. And how can they do that if so. Please note that my users are not in sudo group. So they can't use prctl; I need another option that doesn't require administrative privileges

I thought wrapping my code in a function and setting an alias for it and calling that alias would hide my script but it doesn't seem to work. So is there anyway to hide the code from ps?

Here is an MVC of my code to show why I think the alias trick does not work:

#!/bin/bash
foo(){
    sleep 3 
    ps -G 1,2,3 -o uid,cmd -H
}
alias bar='foo'
while true
do
    sleep 1
    ${BASH_ALIASES[bar]}
    echo 1 
done

And here is a summary of the related parts of what I get as the result:

myid -bash                             (Reasonable)
myid /bin/bash ./myscript.sh           (Reasonable)
myid /bin/bash ./mysctipt.sh           (I don't care but I wonder why it's appearing twice!)
myid ps -G 1,2,3 -o uid,cmd -H         (What I don't want to be viewable)
myid sshd: myusername@pts/9            (Reasonable)

Please note that there was some indention in the output (due to -H option in ps) that I removed and the indentions of the duplicate line was different.

From this I've concluded that making alias etc does not work. By does not work I mean that my users can't make alias for their commands and run those commands and hide their commands this way. Because if they could my ps command for which I had set an alias in my script shouldn't have appeared in the result.

So here is the question in simple words:

Is there anyway for the non-sudo users of my system to run some scripts in a way that I won't be able to notice using the ps command.

p.s. Please note that I'm aware of the pam methods for logging and stuff. I just want to see if this method works.

p.s.s. I pointed out the alias method because a friend told me this will work but it didn't. So I already explained that it doesn't seem to work to prevent people from coming and giving that as an answer.

request!!!

Can someone please explain to my why my question is closed as being an exact duplicate of another question while The answers in the mentioned question does not solve my problem at all!??

Basically what I want is to create a DIY alternative for autokey because it seems to be so buggy and I can't get it to work on my PC.
What I want to know now is how I can receive a key combination and send something else to an application for example I want vim to receive Space+F5 instead of Ctrl+Shift) so I can give different combinations for Ctrl+Shift+k and Ctrl+k. So How can I receive a key combination before vim does and send vim another combination instead of that?

I was struggling so much to install an application. And somewhere in comments someone had said I went brutal and did rm -rf /usr/lib/python2.7 and then I did the same. And after that I did sudo apt purge python2.7-minimal now my system is completely broken for example when I do sudo apt upgrade I get:

The following packages have unmet dependencies:
 gimp : Depends: python:any (>= 2.6.6-7~)
 libboost-mpi-python1.58.0 : Depends: python (< 2.8) but it is not installed
                             Depends: python (>= 2.7~) but it is not installed
                             Depends: python:any (>= 2.7.5-5~)
 libboost-python1.58-dev : Depends: python-dev but it is not installed
                           Depends: python:any (< 2.8)
                           Depends: python:any (>= 2.7.5-5~)
                           Depends: python (>= 2.5) but it is not installed or
                                    python-celementtree but it is not installable or
                                    python-elementtree but it is not installable
 ndiff : Depends: python:any (< 2.8)
         Depends: python:any (>= 2.7.5-5~)
 python-bs4 : Depends: python:any (< 2.8)
              Depends: python:any (>= 2.7.5-5~)
 python-cairo : Depends: python (< 2.8) but it is not installed
                Depends: python (>= 2.7~) but it is not installed
                Depends: python:any (>= 2.7.5-5~)
 python-chardet : Depends: python:any (< 2.8)
                  Depends: python:any (>= 2.7.5-5~)
                  Depends: python-pkg-resources but it is not installed
 python-dbus : Depends: python (< 2.8) but it is not installed
               Depends: python (>= 2.7~) but it is not installed
               Depends: python:any (>= 2.7.5-5~)
 python-gi : Depends: python (< 2.8) but it is not installed
             Depends: python (>= 2.7~) but it is not installed
             Depends: python:any (>= 2.7.5-5~)
 python-gobject-2 : Depends: python (< 2.8) but it is not installed
                    Depends: python (>= 2.7~) but it is not installed
                    Depends: python:any (>= 2.7.5-5~)
 python-gtk2 : Depends: python (>= 2.7) but it is not installed
               Depends: python (< 2.8) but it is not installed
 python-html5lib : Depends: python-six but it is not installed
                   Depends: python:any (< 2.8)
                   Depends: python:any (>= 2.7.5-5~)
 python-lxml : Depends: python (>= 2.7) but it is not installed
               Depends: python (< 2.8) but it is not installed
 python-pip : Depends: python:any (< 2.8)
              Depends: python:any (>= 2.7.5-5~)
              Recommends: python-all-dev (>= 2.6) but it is not installed
 python-setuptools : Depends: python-pkg-resources (= 20.7.0-1) but it is not installed
                     Depends: python:any (< 2.8)
                     Depends: python:any (>= 2.7.5-5~)
 python-wheel : Depends: python:any (< 2.8)
                Depends: python:any (>= 2.7.5-5~)
 python-xlib : Depends: python:any (< 2.8)
               Depends: python:any (>= 2.7.5-5~)
 speedtest-cli : Depends: python (>= 2.7) but it is not installed
                 Depends: python (< 2.8) but it is not installed
                 Depends: python-pkg-resources but it is not installed

And when I issue sudo apt-get -f install I get:

The following additional packages will be installed:
  python python-dev python-pkg-resources python-six python2.7-dev
Suggested packages:
  python-doc python-tk
The following NEW packages will be installed:
  python python-dev python-pkg-resources python-six python2.7-dev
0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded.
21 not fully installed or removed.
Need to get 0 B/533 kB of archives.
After this operation, 1,465 kB of additional disk space will be used.
Do you want to continue? [Y/n] Y
Setting up python2.7-minimal (2.7.12-1ubuntu0~16.04.2) ...
Could not find platform independent libraries <prefix>
Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>]
python2.7: can't open file '/usr/lib/python2.7/py_compile.py': [Errno 2] No such file or directory
dpkg: error processing package python2.7-minimal (--configure):
 subprocess installed post-installation script returned error exit status 2
dpkg: dependency problems prevent configuration of python-minimal:
 python-minimal depends on python2.7-minimal (>= 2.7.11-1~); however:
  Package python2.7-minimal is not configured yet.

dpkg: error processing package python-minimal (--configure):
 dependency problems - leaving unconfigured
No apport report written because the error message indicates its a followup error from a previous failure.
                                                                                                          Errors were encountered while processing:
 python2.7-minimal
 python-minimal
E: Sub-process /usr/bin/dpkg returned an error code (1)

What should I do now!? How can I fix what I've ruined!?

I want to create a module to calculate memory allocations of each process. I searched so much but I couldn't find anyway to make the kernel call my module whenever a process requests memory allocation. Is there any way to do that? if not what is the best performance command for checking if there has been a change in memory so I know when to call ps for analyzing. I don't want to call ps all the time because that has a very low performance. Currently I'm thinking about using free or vmstat. So which one of them or any good option that I'm missing has the best performance?

So I have a list of usernames such as:

user1
user2
user3

I want to apply id on each of them and get something like:

uid=100(user1) gid=5(g1) groups=5(g1),6(g6),7(g10)
.
.

How can I achieve this? Please note that the list is the output of another command say mycommand.

I was wondering if it was possible for some applications to read the content of my clipboard and the security risks of copying passwords to clipboard. How can I check what processes have access to my clipboard (read/write)?

I want to get the directory tree of all the files in a server to which I have read permission. how can I do this!?

How can I get the list of all the users who can ssh to a server via ssh [email protected] ?

Please note that I'm aware of this question and that is not doing what I want!

If it helps the server has so many users in so many different groups and under the home directory there are some group directories and many user directories in those group directories.

Edited:

Please note that the result I get from /etc/passwd is not what I want and is as follows:

root:x:0:0:root:/root:/bin/bash
daemon:x:1:1:daemon:/usr/sbin:/bin/sh
bin:x:2:2:bin:/bin:/bin/sh
sys:x:3:3:sys:/dev:/bin/sh
sync:x:4:65534:sync:/bin:/bin/sync
games:x:5:60:games:/usr/games:/bin/sh
man:x:6:12:man:/var/cache/man:/bin/sh
lp:x:7:7:lp:/var/spool/lpd:/bin/sh
mail:x:8:8:mail:/var/mail:/bin/sh
news:x:9:9:news:/var/spool/news:/bin/sh
uucp:x:10:10:uucp:/var/spool/uucp:/bin/sh
proxy:x:13:13:proxy:/bin:/bin/sh
www-data:x:33:33:www-data:/var/www:/bin/sh
backup:x:34:34:backup:/var/backups:/bin/sh
list:x:38:38:Mailing List Manager:/var/list:/bin/sh
irc:x:39:39:ircd:/var/run/ircd:/bin/sh
gnats:x:41:41:Gnats Bug-Reporting System (admin):/var/lib/gnats:/bin/sh
nobody:x:65534:65534:nobody:/nonexistent:/bin/sh
libuuid:x:100:101::/var/lib/libuuid:/bin/sh
Debian-exim:x:101:103::/var/spool/exim4:/bin/false
statd:x:102:65534::/var/lib/nfs:/bin/false
sshd:x:103:65534::/var/run/sshd:/usr/sbin/nologin
shelladmin:x:1000:1000:shelladmin,,,:/home/shelladmin:/bin/bash
messagebus:x:104:106::/var/run/dbus:/bin/false
festival:x:105:29::/home/festival:/bin/false
ntp:x:106:108::/home/ntp:/bin/false

This list doesn't even include my own username! let alone the other 1000 users.

Edited 2:

So I chatted with Yaron a little and Here are some more info about the system:

-bash-4.2$ ls -lsa /etc/init.d/nis
ls: cannot access /etc/init.d/nis: No such file or directory
-bash-4.2$ ls -lsa /var/yp
ls: cannot access /var/yp: No such file or directory
if it helps, this is the putput of ls -lsa /var
-bash-4.2$ ls -lsa /var
total 48
4 drwxr-xr-x 12 root root 4096 Oct 25 2016 .
4 drwxr-xr-x 22 root root 4096 Oct 25 2016 ..
4 drwxr-xr-x 2 root root 4096 Oct 26 2016 backups
4 drwxr-xr-x 10 root root 4096 Oct 25 2016 cache
4 drwxr-xr-x 34 root root 4096 Oct 25 2016 lib
4 drwxrwsr-x 2 root staff 4096 May 7 2012 local
0 lrwxrwxrwx 1 root root 9 Oct 25 2016 lock -> /run/lock
4 drwxr-xr-x 9 root root 4096 Dec 10 06:25 log
4 drwxrwsr-x 2 root mail 4096 Jul 30 00:51 mail
4 drwxr-xr-x 2 root root 4096 Nov 21 2012 opt
0 lrwxrwxrwx 1 root root 4 Oct 25 2016 run -> /run
4 drwxr-xr-x 5 root root 4096 Oct 25 2016 spool
4 drwxrwxrwt 12 root root 4096 Dec 10 08:18 tmp
4 drwxr-xr-x 2 root root 4096 Feb 16 2013 www
-bash-4.2$ getent passwd
root:x:0:0:root:/root:/bin/bash
daemon:x:1:1:daemon:/usr/sbin:/bin/sh
bin:x:2:2:bin:/bin:/bin/sh
sys:x:3:3:sys:/dev:/bin/sh
sync:x:4:65534:sync:/bin:/bin/sync
games:x:5:60:games:/usr/games:/bin/sh
man:x:6:12:man:/var/cache/man:/bin/sh
lp:x:7:7:lp:/var/spool/lpd:/bin/sh
mail:x:8:8:mail:/var/mail:/bin/sh
news:x:9:9:news:/var/spool/news:/bin/sh
uucp:x:10:10:uucp:/var/spool/uucp:/bin/sh
proxy:x:13:13:proxy:/bin:/bin/sh
www-data:x:33:33:www-data:/var/www:/bin/sh
backup:x:34:34:backup:/var/backups:/bin/sh
list:x:38:38:Mailing List Manager:/var/list:/bin/sh
irc:x:39:39:ircd:/var/run/ircd:/bin/sh
gnats:x:41:41:Gnats Bug-Reporting System (admin):/var/lib/gnats:/bin/sh
nobody:x:65534:65534:nobody:/nonexistent:/bin/sh
libuuid:x:100:101::/var/lib/libuuid:/bin/sh
Debian-exim:x:101:103::/var/spool/exim4:/bin/false
statd:x:102:65534::/var/lib/nfs:/bin/false
sshd:x:103:65534::/var/run/sshd:/usr/sbin/nologin
shelladmin:x:1000:1000:shelladmin,,,:/home/shelladmin:/bin/bash
messagebus:x:104:106::/var/run/dbus:/bin/false
festival:x:105:29::/home/festival:/bin/false
ntp:x:106:108::/home/ntp:/bin/false
-bash-4.2$ cat /etc/nsswitch.conf
# /etc/nsswitch.conf
#
# Example configuration of GNU Name Service Switch functionality.
# If you have the `glibc-doc-reference' and `info' packages installed, try:
# `info libc "Name Service Switch"' for information about this file.

passwd: files ldap
group: files ldap
shadow: files ldap

hosts: files dns
networks: files

protocols: db files
services: db files
ethers: db files
rpc: db files

netgroup: nis
-bash-4.2$ cd /etc/sssd/
-bash: cd: /etc/sssd/: No such file or directory

I was looking into my log files on my server and I found the following lines in: /var/log/.auth.log.1:

pam_unix(sshd:auth): authentication failure; logname= uid=0 euid=0 tty=ssh ruse      r= rhost=218.87.109.156  user=root
Failed password for root from 218.87.109.156 port 7612 ssh2
message repeated 5 times: [ Failed password for root from 218.87.109.156 port 7      612 ssh2]
error: maximum authentication attempts exceeded for root from 218.87.109.156 po      rt 7612 ssh2 [preauth]
Disconnecting: Too many authentication failures [preauth]
PAM 5 more authentication failures; logname= uid=0 euid=0 tty=ssh ruser= rhost=      218.87.109.156  user=root
PAM service(sshd) ignoring max retries; 6 > 3
pam_unix(sshd:auth): authentication failure; logname= uid=0 euid=0 tty=ssh ruse      r= rhost=218.87.109.156  user=root
Failed password for root from 218.87.109.156 port 50092 ssh2
message repeated 5 times: [ Failed password for root from 218.87.109.156 port 5      0092 ssh2]
Failed password for invalid user service from 188.187.119.158 port 52722 ssh2
pam_unix(sshd:auth): check pass; user unknown
Failed password for root from 113.195.145.79 port 6500 ssh2
Received disconnect from 121.18.238.39 port 58070:11:  [preauth]
Failed password for root from 121.18.238.119 port 57538 ssh2
Failed password for root from 121.18.238.39 port 57268 ssh2
Failed password for root from 121.18.238.106 port 34360 ssh2
Disconnected from 92.222.216.31 port 58960 [preauth]
Invalid user truman from 92.222.216.31
Received disconnect from 92.222.216.31 port 33922:11: Normal Shutdown, Thank you       for playing [preauth]
input_userauth_request: invalid user truman [preauth]

And it keeps going on like this for thousands of lines!

And also somewhere I have:

Nov 30 13:17:01 Aran CRON[6038]: pam_unix(cron:session): session opened for user root by (uid=0)

What does CRON mean in here? so can somebody please explain to me what are these logs? Am I in danger? what should I do to get myself more secure?

I ran this command:

nohup python3 crawler.py > out.txt

And I forgot to specify PID at the end of it!

Now how can I find out if it's actually running and how can I kill it?

I recently installed Ubuntu 16.04 on my device and I find my wifi speed to be so low compared to what I had on the same network in Windows.

Wireless info script output.

My device is Lenovo Y50 which uses Intel Dual Band Wireless-AC 3168

So I had a windows 10 installed on one of my partitions and all my files on the other. I decided to get rid of windows and install Ubuntu 16.04 . when attempted I chose something else and I chose to format the first partition to ext4 and mounted it to / and chose to format it. I also made a 960MB swap partition. I didn't connect my laptop to Internet during the installation. my device is Lenovo y50 with 256GB SSD hard drive. Then I had so many problems after installation then and I did the process so many time I guess one of the times I used BIOS instead of UEFI and then every time I had the error failed to install grub2 package to /target etc so I found somewhere that I should make a 200MB fat32 partition with boot flag. and I did and I finally could install my Ubuntu then whenever I wanted to install something I had a similar issue to this. So i ran this command:

sudo cp /boot/grub/x86_64-efi/modinfo.sh /usr/lib/grub/i386-pc/modinfo.sh

And then I started to have this new error:

After this operation, 0 B of additional disk space will be used. Do you want to continue? [Y/n] Y Setting up grub-efi-amd64-signed (1.66.14+2.02~beta2-36ubuntu3.14) ... Installing for x86_64-efi platform. grub-install: error: cannot open `/usr/lib/grub/i386-pc/moddep.lst': No such file or directory. dpkg: error processing package grub-efi-amd64-signed (--configure): subprocess installed post-installation script returned error exit status 1 Errors were encountered while processing: grub-efi-amd64-signed E: Sub-process /usr/bin/dpkg returned an error code (1)

So what should I do!? I'm really sick of this issue! Is there anyway I could completely unistall grub2 and reinstall it again? Is it safe and easy to use boot-repair? Where can I find the moddep.lst file!?

Update

I ran:

sudo cp /boot/grub/i386-pc/* /usr/lib/grub/i386-pc/

Now I get the following error:

Setting up grub-efi-amd64-signed (1.66.14+2.02~beta2-36ubuntu3.14) ... Installing for i386-pc platform. grub-install: error: install device isn't specified. dpkg: error processing package grub-efi-amd64-signed (--configure): subprocess installed post-installation script returned error exit status 1 Errors were encountered while processing: grub-efi-amd64-signed E: Sub-process /usr/bin/dpkg returned an error code (1) actually I wonder why I have the i386 directory anyway since my system is 64bit and I have installed amd64.

When I try to update package list on my DigitalOcean VPS with the command:

aran@Aran:~$ sudo apt-get update
Ign http://mirrors.digitalocean.com trusty InRelease
Hit http://mirrors.digitalocean.com trusty-updates InRelease
Hit http://mirrors.digitalocean.com trusty-backports InRelease
Hit http://security.ubuntu.com trusty-security InRelease
Hit http://mirrors.digitalocean.com trusty Release.gpg
Hit http://mirrors.digitalocean.com trusty Release
Hit http://mirrors.digitalocean.com trusty-updates/main Sources
Hit http://mirrors.digitalocean.com trusty-updates/restricted Sources
Hit http://mirrors.digitalocean.com trusty-updates/universe Sources
Hit http://mirrors.digitalocean.com trusty-updates/multiverse Sources
Hit http://mirrors.digitalocean.com trusty-updates/main amd64 Packages
Hit http://mirrors.digitalocean.com trusty-updates/restricted amd64 Packages
Hit http://mirrors.digitalocean.com trusty-updates/universe amd64 Packages
Hit http://mirrors.digitalocean.com trusty-updates/multiverse amd64 Packages
Hit http://mirrors.digitalocean.com trusty-updates/main i386 Packages
Hit http://mirrors.digitalocean.com trusty-updates/restricted i386 Packages
Hit http://mirrors.digitalocean.com trusty-updates/universe i386 Packages
Hit http://mirrors.digitalocean.com trusty-updates/multiverse i386 Packages
Hit http://mirrors.digitalocean.com trusty-updates/main Translation-en
Hit http://mirrors.digitalocean.com trusty-updates/multiverse Translation-en
Hit http://mirrors.digitalocean.com trusty-updates/restricted Translation-en
Hit http://mirrors.digitalocean.com trusty-updates/universe Translation-en
Hit http://mirrors.digitalocean.com trusty-backports/main Sources
Hit http://mirrors.digitalocean.com trusty-backports/restricted Sources
Hit http://mirrors.digitalocean.com trusty-backports/universe Sources
Hit http://mirrors.digitalocean.com trusty-backports/multiverse Sources
Hit http://mirrors.digitalocean.com trusty-backports/main amd64 Packages
Hit http://mirrors.digitalocean.com trusty-backports/restricted amd64 Packages
Hit http://mirrors.digitalocean.com trusty-backports/universe amd64 Packages
Hit http://mirrors.digitalocean.com trusty-backports/multiverse amd64 Packages
Hit http://mirrors.digitalocean.com trusty-backports/main i386 Packages
Hit http://mirrors.digitalocean.com trusty-backports/restricted i386 Packages
Hit http://mirrors.digitalocean.com trusty-backports/universe i386 Packages
Hit http://mirrors.digitalocean.com trusty-backports/multiverse i386 Packages
Hit http://mirrors.digitalocean.com trusty-backports/main Translation-en
Hit http://mirrors.digitalocean.com trusty-backports/multiverse Translation-en
Hit http://mirrors.digitalocean.com trusty-backports/restricted Translation-en
Hit http://mirrors.digitalocean.com trusty-backports/universe Translation-en
Hit http://security.ubuntu.com trusty-security/main Sources
Hit http://security.ubuntu.com trusty-security/universe Sources
Hit http://security.ubuntu.com trusty-security/main amd64 Packages
Hit http://security.ubuntu.com trusty-security/universe amd64 Packages
Hit http://mirrors.digitalocean.com trusty/main Sources
Hit http://mirrors.digitalocean.com trusty/restricted Sources
Hit http://mirrors.digitalocean.com trusty/universe Sources
Hit http://mirrors.digitalocean.com trusty/multiverse Sources
Hit http://mirrors.digitalocean.com trusty/main amd64 Packages
Hit http://mirrors.digitalocean.com trusty/restricted amd64 Packages
Hit http://mirrors.digitalocean.com trusty/universe amd64 Packages
Hit http://mirrors.digitalocean.com trusty/multiverse amd64 Packages
Hit http://security.ubuntu.com trusty-security/main i386 Packages
Hit http://mirrors.digitalocean.com trusty/main i386 Packages
Hit http://mirrors.digitalocean.com trusty/restricted i386 Packages
Hit http://mirrors.digitalocean.com trusty/universe i386 Packages
Hit http://mirrors.digitalocean.com trusty/multiverse i386 Packages
Hit http://mirrors.digitalocean.com trusty/main Translation-en
Hit http://mirrors.digitalocean.com trusty/multiverse Translation-en
Hit http://security.ubuntu.com trusty-security/universe i386 Packages
Hit http://security.ubuntu.com trusty-security/main Translation-en
Hit http://security.ubuntu.com trusty-security/universe Translation-en
Hit http://mirrors.digitalocean.com trusty/restricted Translation-en
Hit http://mirrors.digitalocean.com trusty/universe Translation-en
Ign http://mirrors.digitalocean.com trusty/main Translation-en_US
Ign http://mirrors.digitalocean.com trusty/multiverse Translation-en_US
Ign http://mirrors.digitalocean.com trusty/restricted Translation-en_US
Ign http://mirrors.digitalocean.com trusty/universe Translation-en_US
Reading package lists... Error!

Here are the content of sources.list:

## Note, this file is written by cloud-init on first boot of an instance
## modifications made here will not survive a re-bundle.
## if you wish to make changes you can:
## a.) add 'apt_preserve_sources_list: true' to /etc/cloud/cloud.cfg
##     or do the same in user-data
## b.) add sources in /etc/apt/sources.list.d
## c.) make changes to template file /etc/cloud/templates/sources.list.tmpl
#

# See http://help.ubuntu.com/community/UpgradeNotes for how to upgrade to
# newer versions of the distribution.
deb http://mirrors.digitalocean.com/ubuntu trusty main restricted
deb-src http://mirrors.digitalocean.com/ubuntu trusty main restricted

## Major bug fix updates produced after the final release of the
## distribution.
deb http://mirrors.digitalocean.com/ubuntu trusty-updates main restricted
deb-src http://mirrors.digitalocean.com/ubuntu trusty-updates main restricted

## N.B. software from this repository is ENTIRELY UNSUPPORTED by the Ubuntu
## team. Also, please note that software in universe WILL NOT receive any
## review or updates from the Ubuntu security team.
deb http://mirrors.digitalocean.com/ubuntu trusty universe
deb-src http://mirrors.digitalocean.com/ubuntu trusty universe
deb http://mirrors.digitalocean.com/ubuntu trusty-updates universe
deb-src http://mirrors.digitalocean.com/ubuntu trusty-updates universe

## N.B. software from this repository is ENTIRELY UNSUPPORTED by the Ubuntu
## team, and may not be under a free licence. Please satisfy yourself as to
## your rights to use the software. Also, please note that software in
## multiverse WILL NOT receive any review or updates from the Ubuntu
## security team.
deb http://mirrors.digitalocean.com/ubuntu trusty multiverse
deb-src http://mirrors.digitalocean.com/ubuntu trusty multiverse
deb http://mirrors.digitalocean.com/ubuntu trusty-updates multiverse
deb-src http://mirrors.digitalocean.com/ubuntu trusty-updates multiverse

## Uncomment the following two lines to add software from the 'backports'
## repository.
## N.B. software from this repository may not have been tested as
## extensively as that contained in the main release, although it includes
## newer versions of some applications which may provide useful features.
## Also, please note that software in backports WILL NOT receive any review
## or updates from the Ubuntu security team.
deb http://mirrors.digitalocean.com/ubuntu trusty-backports main restricted universe multive$
deb-src http://mirrors.digitalocean.com/ubuntu trusty-backports main restricted universe mul$

## Uncomment the following two lines to add software from Canonical's
## 'partner' repository.
## This software is not part of Ubuntu, but is offered by Canonical and the
## respective vendors as a service to Ubuntu users.
# deb http://archive.canonical.com/ubuntu trusty partner
# deb-src http://archive.canonical.com/ubuntu trusty partner

deb http://security.ubuntu.com/ubuntu trusty-security main
deb-src http://security.ubuntu.com/ubuntu trusty-security main
deb http://security.ubuntu.com/ubuntu trusty-security universe
deb-src http://security.ubuntu.com/ubuntu trusty-security universe
# deb http://security.ubuntu.com/ubuntu trusty-security multiverse
# deb-src http://security.ubuntu.com/ubuntu trusty-security multiverse

And here are the things in /var/log/apt/term.log:

Log started: 2017-05-29  01:21:39
Selecting previously unselected package libxslt1.1:amd64.
(Reading database ... ^M(Reading database ... 5%^M(Reading database ... 10%^M(Reading databa$
Preparing to unpack .../libxslt1.1_1.1.28-2ubuntu0.1_amd64.deb ...
Unpacking libxslt1.1:amd64 (1.1.28-2ubuntu0.1) ...
Selecting previously unselected package nginx-common.
Preparing to unpack .../nginx-common_1.4.6-1ubuntu3.7_all.deb ...
Unpacking nginx-common (1.4.6-1ubuntu3.7) ...
Selecting previously unselected package nginx-core.
Preparing to unpack .../nginx-core_1.4.6-1ubuntu3.7_amd64.deb ...
Unpacking nginx-core (1.4.6-1ubuntu3.7) ...
Selecting previously unselected package nginx.
Preparing to unpack .../nginx_1.4.6-1ubuntu3.7_all.deb ...
Unpacking nginx (1.4.6-1ubuntu3.7) ...
Processing triggers for ufw (0.34~rc-0ubuntu2) ...
Processing triggers for ureadahead (0.100.0-16) ...
Processing triggers for man-db (2.6.7.1-1ubuntu1) ...
Setting up libxslt1.1:amd64 (1.1.28-2ubuntu0.1) ...
Setting up nginx-common (1.4.6-1ubuntu3.7) ...
Setting up nginx-core (1.4.6-1ubuntu3.7) ...
Setting up nginx (1.4.6-1ubuntu3.7) ...
Processing triggers for libc-bin (2.19-0ubuntu6.11) ...
Log ended: 2017-05-29  01:21:44

Log started: 2017-05-29  01:22:35
Selecting previously unselected package php5-fpm.
(Reading database ... ^M(Reading database ... 5%^M(Reading database ... 10%^M(Reading databa$
Preparing to unpack .../php5-fpm_5.5.9+dfsg-1ubuntu4.21_amd64.deb ...
Unpacking php5-fpm (5.5.9+dfsg-1ubuntu4.21) ...
Processing triggers for ureadahead (0.100.0-16) ...
Processing triggers for man-db (2.6.7.1-1ubuntu1) ...
Setting up php5-fpm (5.5.9+dfsg-1ubuntu4.21) ...

Creating config file /etc/php5/fpm/php.ini with new version
php5_invoke: Enable module json for fpm SAPI
php5_invoke: Enable module gd for fpm SAPI
php5_invoke: Enable module mysqli for fpm SAPI
php5_invoke: Enable module pdo_mysql for fpm SAPI
php5_invoke: Enable module pdo for fpm SAPI
php5_invoke: Enable module opcache for fpm SAPI
php5_invoke: Enable module ssh2 for fpm SAPI
php5_invoke: Enable module readline for fpm SAPI
php5_invoke: Enable module mysql for fpm SAPI
php5-fpm start/running, process 7326
Processing triggers for ureadahead (0.100.0-16) ...
Log ended: 2017-05-29  01:22:37

Here are the logs in history.log in the same directory:

Start-Date: 2017-05-29  01:21:39
Commandline: apt-get install nginx
Install: nginx-core:amd64 (1.4.6-1ubuntu3.7, automatic), libxslt1.1:amd64 (1.1.28-2ubuntu0.1$
End-Date: 2017-05-29  01:21:44

Start-Date: 2017-05-29  01:22:35
Commandline: apt-get install php5-fpm
Install: php5-fpm:amd64 (5.5.9+dfsg-1ubuntu4.21)
End-Date: 2017-05-29  01:22:37