I can't figure out how to shrink a VHD using Microsoft System Center Virtual Machine Manager 2008 R2. Viewing the article Shrink your VHD size seems like this would be simple to do. However I don't see any of those check boxes that article shows.
The article does mention that all check points need deleted first, I have followed that information and deleted the check points.
Here's what I see
This seems to be a limitation in terms of the IDE virtualization. If a hard drive is on the IDE adapter, the virtual machine must be stopped before any changes to the hard disk can be made.
http://technet.microsoft.com/en-us/library/dd353280.aspx
The reason you're not seeing the options is probably because the VM is running.
Here's a screenshot of my VM properties of a running VM with IDE as the storage configuration.
Hope this helps!
Between yesterday and this morning 2 things occurred inside of SC VMM without any interaction from myself:
Combining this observation with information I read yesterday that deleting check points is a slow process, it appears that I had deleted the check points but they weren't physically deleted. That at any point a VHD has check points in any state it disables access to these disk controls.